Andrzej Kudlicki

Position:	Postdoctoral Researcher
Address:	5323 Harry Hines Blvd.   Dallas, Texas 75390-8816
Office	ND10.214D
Phone:	214-645-6378
Fax:	214-645-6353
Email:

Education:

• Ph.D. - Physics - Polish Academy of Sciences, Warsaw, Poland, 2000
• M.Sc. - Physics - Warsaw University, Warsaw, Poland, 1995

Research Interests:

• Microarray data analysis
• Sceptrans - online analysis of periodic gene transcription
• Metabolic and Cell-division cycles of yeast
• Somitogenesis and regulation of Hox genes
• Crystallographic algorithm and software development:
  • Crystallographic FFT
  • Phasing
  • Model building
• Phylogenetics
• Robotic systems

Peer-Reviewed Publications:

Kudlicki, A., Rowicka, M.(equal author), Otwinowski, Z.:
The crystallographic fast Fourier transform: Recursive symmetry reduction.
Acta Cryst. A63, 465-480 (2007). PDF

Kudlicki, A., Rowicka, M., Otwinowski, Z.:
SCEPTRANS: an online tool for analyzing periodic transcription in yeast
Bioinformatics, 23, 1559-1561 (2007)   Link

Rowicka, M., Kudlicki, A. (equal first author), Tu, B.P. and Otwinowski, Z.:
High-resolution timing of the cell-cycle regulated gene expression
Proc. Nat. Acad. Sci., (2007) Link.

Wójcik, C., Rowicka, M., Kudlicki, A., Nowis, D., McConnell, E., Kujawa, M. and DeMartino, G.N.:
Valosin-containing protein (p97) is a regulator of endoplasmic reticulum stress and of the degradation of N-end rule and ubiquitin-fusion degradation pathway substrates in mammalian cells
Molecular Biology Of The Cell 17 (11): 4606-4618 (2006)   Link

Tu, B.P., Kudlicki, A., Rowicka, M. and McKnight, S.L.:
Logic of the Yeast Metabolic Cycle: Temporal compartmentalization of Cellular Processes
Science 310, 1152 (2005)   Link

Kudlicki, A., Rowicka, M., Gilski, M., Otwinowski, Z.:
An efficient routine for computing symmetric real spherical harmonics for high orders of expansion.
Journal of Applied Crystallography 38, 501 (2005), PDF

Kudlicki, A., Rowicka, M., Otwinowski, Z.:
The crystallographic fast Fourier transform. IV. FFT-asymmetric units in the reciprocal space
Acta Cryst. A60, 146-152 (2004) PDF

Rowicka, M., Kudlicki, A., Zelinka, J. and Otwinowski, Z.:
Coordinate transformations in modern crystallographic computing
Acta Cryst. A60, 542-549 (2004). PDF

Kudlicki A., Rowicka, M. and Z. Otwinowski, Z.:
Stereochemical Rules for Connecting Disjoint Protein Fragments
Amer Inst Phys Proceedings 735, 169 (2004)

Rowicka, M. and Kudlicki, A.
Bayesian Modeling of Protein Networks
Amer Inst Phys Proceedings 735, 283 (2004)

Rowicka, M., Kudlicki, A. and Otwinowski, Z.:
The crystallographic fast Fourier transform. III. Centred lattices
Acta Cryst. A59, 183-192 (2003) PDF

Rowicka, M., Kudlicki, A. and Otwinowski, Z.:
The crystallographic fast Fourier transform. II. One-step symmetry reduction
Acta Cryst. A59, 172-182 (2003) PDF

Rowicka, M., Kudlicki, A. and Otwinowski, Z.:
The crystallographic fast Fourier transform. I. p3 symmetry
Acta Cryst. A58, 574-579 (2002) PDF

Astrophysics:

Ciecielag, P., Chorodowski, M., Kiraga, M., Strauss, M., Kudlicki, A., Bouchet, F.:
Guassianity of Cosmic Velocity Fields and Linearity of the Velocity-gravity Relation.
Monthly Notices of the Royal Astronomical Society 641-651 (2003) PDF

Kudlicki, A., Chodorowski, M., Strauss, M.,. Ciecielag, P.:
The cosmic gravity-velocity relation
Advances in Space Research, 31, 2, 469-474 (2002), PDF

Kudlicki, A., Chodorowski, M., Plewa, T., Rozyczka, M.:
Reconstructing cosmic peculiar velocities from the mildly non-linear density field
Monthly Notices of the Royal Astronomical Society, 316, 3, 464-472, (2000), PDF

Ciecielag, P., Chodorowski, M., Kudlicki, A.
Local group velocity versus gravity: Nonlinear effects
Acta Astronomica, 51, 103-115 (2001). Link

Kudlicki, A., Chodorowski, M., Plewa, T., Rozyczka, M.:
Peculiar Velocities from the Nonlinear Density Field
ASP Conference Series, 201, 310 (2000) PDF

Bernardeau, F., Chodorowski, M., Lokas, E., Stompor, R., Kudlicki, A.:
Non-linearity and stochasticity in the density-velocity relation
Monthly Notices of the Royal Astronomical Society, 309, 2, 543-555. (1999), PDF

Kudlicki, A., Plewa, T., Rozyczka, M.
CPPA -- a New Hydrodynamical Code for Cosmological Large-Scale Structure Simulations
Acta Astronomica, 46, 297-309 (1996). Link

Soltan, A., Kudlicki, A.:
Nonuniform Distribution of Galaxies in Very Large Scale
Acta Astronomica, 44, 21-31, (1994), PDF

Other publications:

Tu, B.P., Kudlicki, A., Rowicka, M. and McKnight, S.L.:
Let the data speak
Nature Reviews Molecular Cell Biology 7 (12): C1-C2 2006   Link

Statistical Properties of Cosmic Velocity Fields - Numerical Simulations
Kudlicki, A.: Ph.D. thesis (in Polish) PDF
Pol. Acad. Sci. (2000)

Structure Formation in Cosmology
Rozyczka, M., Plewa, T. and Kudlicki, A.
in: "Free Boundary Problems and Applications", Ditman Research Notes in Mathematical Sciences, Addison Wesley Longman (1996) PDF

Kudlicki, A., Rowicka, M. and Otwinowski, Z.:
The ultimate Fourier transform for crystallography
Erice Crystallography Publications, Padova, Italy (2002)

Comparison of Selected Algorithms for Cosmological Simulations in the Weakly-Nonlinear Regime
Kudlicki, A.: M.Sc. thesis (in Polish) PDF
Warsaw University (1995)

Rowicka, M., Kudlicki, A. and Otwinowski, Z.:
The ultimate fast Fourier transform for crystallography
Acta Cryst. A58 (Supplement), C87 (2002)

Other stuff: