Otwinowski Lab

- Publications from the Lab

  • Rezacova, P., Borek, D., Moy, S.F., Joachimiak, A., Otwinowski, Z. (2008)
    Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus. Link
    Proteins 70: 311-9
  • Kudlicki, A., Rowicka, M., Otwinowski, Z. (2007)
    The crystallographic fast Fourier transform. Recursive symmetry reduction. Acta Crystallogr.
    A 63: 465-80 Link
  • Machius, M., Brautigam, C.A., Tomchick, D.R., Ward, P., Otwinowski, Z., Blevins, J.S., Deka, R.K., Norgard, M.V. (2007)
    Structural and biochemical basis for polyamine binding to the Tp0655 lipoprotein of Treponema pallidum: putative role for Tp0655 (TpPotD) as a polyamine receptor.
    J. Mol. Biol. 373: 681-94 Link
  • Rowicka, M., Kudlicki, A., Tu, B.P., Otwinowski, Z. (2007)
    High-resolution timing of cell cycle-regulated gene expression.
    Proc. Natl. Acad. Sci. U.S.A. 104: 16892-7 Link
  • Rezacova, P., Krejcirikova, V., Borek, D., Moy, S.F., Joachimiak, A., Otwinowski, Z. (2007)
    The crystal structure of the effector-binding domain of the trehalose repressor TreR from Bacillus subtilis 168 reveals a unique quarternary assembly.
    Proteins 69: 679-82 Link
  • Grabowski, M., Joachimiak, A., Otwinowski, Z., Minor, W. (2007)
    Structural genomics: keeping up with expanding knowledge of the protein universe.
    Curr. Opin. Struct. Biol. 17: 347-53 Link
  • Kudlicki, A., Rowicka, M., Otwinowski, Z. (2007)
    SCEPTRANS: an online tool for analyzing periodic transcription in yeast.
    Bioinformatics 23: 1559-61 Link
  • Borek, D., Ginell, S.L., Cymborowski, M., Minor, W., Otwinowski, Z. (2007)
    The many faces of radiation-induced changes.
    J. Synchrotron. Radiat. 14: 24-33 pdf
  • Yang, M. Gocke, C.B., Luo, X., Borek, D., Tomchick, D.R., Machius, M., Otwinowski, Z, Yu H. (2006)
    Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase.
    Mol. Cell. 23: 377-87 Link
  • Minor, W., Cymborowski, M., Otwinowski, Z., Chruszcz, M. (2006)
    HKL-3000: the integration of data reduction and structure solution-from diffraction images
    to an initial model in minute
    Acta Crystallogr. D 62: 859-66 pdf
  • Tu, B.P., Kudlicki, A. Rowicka, M., McKnight, S.L. (2005)
    Logic of the Yeast Metabolic Cycle: Temporal compartmentalization of Cellular Processes.
    Science 310: 1152 Link
  • Kudlicki, A., Rowicka, M., Gilski, M., Otwinowski, Z. (2005)
    An efficient routine for computing symmetric real spherical harmonics for high orders
    of expansion
    Journal of Applied Crystallography 38: 501 pdf
  • Pertsemlidis, A., Zelinka, J., Fondon, J.W. 3rd, Henderson, R.K., Otwinowski, Z. (2005)
    Bayesian statistical studies of the Ramachandran distribution.
    Stat. Appl. Genet. Mol. Biol. 4: Article 35 Link
  • Stefankova, P., Maderova, J., Barak, I., Kollarova, M., Otwinowski, Z. (2005)
    Expression, purification and X-ray crystallographic analysis of thioredoxin from Streptomyces coelicolor.
    Acta Crystallogr. F 61: 164-8 Link
  • Cigler, P., Kozisek, M., Rezacova, P., Brynda, J., Otwinowski, Z., Pokorna, J., Plesek, J., Gruner, B., Doleckova-Maresova, L., Masa, M., Sedlacek, J., Bodem, J., Krausslich, H.G., Kral, V., Konvalinka, J. (2005)
    From nonpeptide toward noncarbon protease inhibitors: metallacarboranes as specific
    and potent inhibitors of HIV protease
    Proc. Natl. Acad. Sci. U.S.A. 102: 15394-9 Link
  • Kudlicki, A., Rowicka, M., Otwinowski, Z.(2004)
    Stereochemical Rules for Connecting Disjoint Protein Fragments.
    AIP Conference Proceedings 735, 169 pdf
  • Rowicka, M, Kudlicki, A, Zelinka, J, Otwinowski, Z. (2004)
    Coordinate transformations in modern crystallographic computing.
    Acta Crystallogr. A 60: 542-9 pdf
  • O'Toole, N., Grabowski, M., Otwinowski, Z., Minor, W., Cygler, M. (2004)
    The structural genomics experimental pipeline: insights from global target lists.
    Proteins 56: 201-10 Link
  • Kudlicki, A., Rowicka, M., Otwinowski, Z. (2004)
    The crystallographic fast Fourier transform. IV. FFT-asymmetric units in the reciprocal space.
    Acta Crystallogr. A 60: 146-52 pdf
  • Rowicka, M., Otwinowski, Z. (2003)
    Application of Maximum Entropy principle to modeling torsion angle probalbilty distribution
    in proteins
    AIP Conference Proceedings 707: 359-70 pdf
  • Borek, D., Minor, W., Otwinowski, Z. (2003)
    Measurement errors and their consequences in protein crystallography.
    Acta Crystallogr. D 59: 2031-8 Link
  • Otwinowski, Z., Borek, D., Majewski, W., Minor, W. (2003)
    Multiparametric scaling of diffraction intensities.
    Acta Crystallogr. A 59: 228-34 HTML, PDF
  • Rowicka, M., Kudlicki, A., Otwinowski, Z. (2003)
    The crystallographic fast Fourier transform. III. Centred lattices.
    Acta Crystallogr. A 59: 183-92 PDF
  • Rowicka, M., Kudlicki, A., Otwinowski, Z. (2003)
    The crystallographic fast Fourier transform. II. One-step symmetry reduction.
    Acta Crystallogr. A 59: 172-82 PDF
  • Rowicka, M., Kudlicki, A., Otwinowski, Z. (2002)
    The crystallographic fast Fourier transform. I. p3 symmetry.
    Acta Crystallogr. A 58: 574-9 PDF
  • Pavelcik, F., Zelinka, J., Otwinowski, Z. (2002)
    Methodology and applications of automatic electron-density map interpretation
    by six-dimensional rotational and translational search for molecular fragments
    Acta Crystallogr. D 58: 275-83 Link
  • Minor, W., Cymborowski, M., Otwinowski, Z. (2002)
    Automatic system for crystallographic data collection and analysis.
    Acta. Phys. Pol. A 101: 613-619 Link
  • Esser, L., Otwinowski, Z., Kim, H. (2002)
    Acta. Crystallogr. E 58: 170-171, Part 2 Feb 2002 HTML, PDF
  • Taylor, A.B., Smith, B.S., Kitada, S., Kojima, K., Miyaura, H., Otwinowski, Z., Ito, A., Deisenhofer, J. (2001)
    Crystal structures of mitochondrial processing peptidase reveal the mode for specific cleavage of import signal sequences.
    Structure 9: 615-25 pdf
  • Korolev, S., Dementieva, I., Sanishvili, R., Minor, W., Otwinowski, Z., Joachimiak, A. (2001)
    Using surface-bound rubidium ions for protein phasing.
    Acta Crystallogr. D 57: 1008-12 Link
  • Minor, W., Tomchick, D., Otwinowski, Z. (2000)
    Strategies for macromolecular synchrotron crystallography.
    Structure 8: R105-10 Link
  • Walsh, M.A., Otwinowski, Z., Perrakis, A., Anderson, P.M., Joachimiak, A. (2000)
    Structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site.
    Structure 8: 505-14 Link
  • Minor, W., Steczko, J., Stec, B., Otwinowski, Z., Bolin, J.T., Walter, R., Axelrod, B. (1996)
    Crystal structure of soybean lipoxygenase L-1 at 1.4 A resolution.
    Biochemistry 35: 10687-701 Link
  • Boisvert, D.C., Wang, J., Otwinowski, Z., Horwich, A.L., Sigler, P.B. (1996)
    The 2.4 A crystal structure of the bacterial chaperonin GroEL complexed with ATP gamma S.
    Nat. Struct. Biol. 3: 170-7 Link
  • Zhang, R.G., Westbrook, M.L., Westbrook, E.M., Scott, D.L., Otwinowski, Z., Maulik, P.R., Reed, R.A., Shipley, G.G. (1995)
    The 2.4 A crystal structure of cholera toxin B subunit pentamer: choleragenoid.
    J. Mol. Biol. 251: 550-62 Link

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